Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

cultured GM12878 cells

chip antibody

H3K4me3

antibody manufacturer

Millipore

antibody catalog number

07-473

cell line

GM12878

Sequenced DNA Library

library_name

GSM646327: GM12878_H3K4me3_rep2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

9060257

Reads aligned (%)

82.9

Duplicates removed (%)

3.4

Number of peaks

11202 (qval < 1E-05)

hg19

Number of total reads

9060257

Reads aligned (%)

82.4

Duplicates removed (%)

3.9

Number of peaks

11443 (qval < 1E-05)