Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

cultured GM12878 cells

chip antibody

H3K4me1

antibody manufacturer

Abcam

antibody catalog number

ab8895

cell line

GM12878

Sequenced DNA Library

library_name

GSM646322: GM12878_H3K4me1_rep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

18421926

Reads aligned (%)

79.0

Duplicates removed (%)

3.8

Number of peaks

3313 (qval < 1E-05)

hg19

Number of total reads

18421926

Reads aligned (%)

78.5

Duplicates removed (%)

4.1

Number of peaks

3388 (qval < 1E-05)