Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

source_name
CD34
condition
CD34 WT
antibody
Anti-CTCF
vendor
Upstate

Sequenced DNA Library

library_name
GSM651541: CD34_WT_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
9835165
Reads aligned (%)
71.5
Duplicates removed (%)
5.9
Number of peaks
10258 (qval < 1E-05)

hg38

Number of total reads
9835165
Reads aligned (%)
72.4
Duplicates removed (%)
5.4
Number of peaks
10238 (qval < 1E-05)

Base call quality data from DBCLS SRA