Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

source_name
BM derived Mac DNasel
cell type
Bone marrow derived-macrophages
target
DNase1 DHS

Sequenced DNA Library

library_name
GSM652857: BM_Mac_DNaselHS
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
7509103
Reads aligned (%)
95.1
Duplicates removed (%)
4.6
Number of peaks
9900 (qval < 1E-05)

mm9

Number of total reads
7509103
Reads aligned (%)
95.0
Duplicates removed (%)
4.7
Number of peaks
9900 (qval < 1E-05)

Base call quality data from DBCLS SRA