SRX037432
GSM648494: aTconv-H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
aTconv cells from PBMC, normal
gender
male
cell type
aTconv cells
chip antibody
H3K4me1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM648494: aTconv-H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14792460
Reads aligned (%)
17.1
Duplicates removed (%)
2.8
Number of peaks
5799 (qval < 1E-05)

hg19

Number of total reads
14792460
Reads aligned (%)
17.0
Duplicates removed (%)
2.9
Number of peaks
5804 (qval < 1E-05)

Base call quality data from DBCLS SRA