SRX037111
GSM646562: Stam SKMC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Muscle
Cell type
SKMC
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle cells

Attributes by original data submitter

Sample

source_name
SKMC
biomaterial_provider
Lonza
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
SKMC
cell organism
human
cell description
skeletal muscle cells
cell lineage
mesoderm
cell sex
U
labversion
lmax-v1.0

Sequenced DNA Library

library_name
GSM646562: Stam_SKMC
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
632856867
Reads aligned (%)
96.3
Duplicates removed (%)
67.6
Number of peaks
362216 (qval < 1E-05)

hg19

Number of total reads
632856867
Reads aligned (%)
95.8
Duplicates removed (%)
68.4
Number of peaks
360272 (qval < 1E-05)

Base call quality data from DBCLS SRA