Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Tamoxifen resistance MCF7 cell line
cell type
Breast cancer cell
cell line
MCF7, tamoxifen resistance
agent
E2 treated
chip antibody
ER
vendor
Santa Cruz Biotechnology
catalog number
sc-8005

Sequenced DNA Library

library_name
GSM640422: ER E2 treat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
16401648
Reads aligned (%)
35.1
Duplicates removed (%)
19.7
Number of peaks
550 (qval < 1E-05)

hg38

Number of total reads
16401648
Reads aligned (%)
36.1
Duplicates removed (%)
18.5
Number of peaks
497 (qval < 1E-05)

Base call quality data from DBCLS SRA