SRX036559
GSM641826: Input sample3 CD24+

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast cells
NA
NA

Attributes by original data submitter

Sample

source_name
reduction mammoplasty
tissue
breast
cell type
epithelial cell
disease state
normal
cell marker
CD24+
cell purification antibody vendor
BD-Pharmingen
cell purification antibody catalog number
555426
chip antibody
none

Sequenced DNA Library

library_name
GSM641826: Input_sample3_CD24+
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24464213
Reads aligned (%)
61.4
Duplicates removed (%)
1.6
Number of peaks
508 (qval < 1E-05)

hg19

Number of total reads
24464213
Reads aligned (%)
60.9
Duplicates removed (%)
2.4
Number of peaks
775 (qval < 1E-05)

Base call quality data from DBCLS SRA