SRX035985
GSM640768: 1Div ChIP-Seq H3K36me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Doxycycline-induced MEFs
cell division cohort
1
agent
Doxycycline
cell type
secondary, inducible MEFs
strain
129/SvJ x C57/B6 hybrid
chip antibody
H3K36me3
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM640768: 1Div_ChIP-Seq_H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35011249
Reads aligned (%)
97.5
Duplicates removed (%)
20.0
Number of peaks
962 (qval < 1E-05)

mm9

Number of total reads
35011249
Reads aligned (%)
97.3
Duplicates removed (%)
20.1
Number of peaks
987 (qval < 1E-05)

Base call quality data from DBCLS SRA