SRX035968
GSM640751: MEFControl ChIP-Seq H3K4me2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Uninduced MEFs
cell division cohort
MEFControl
agent
control
cell type
secondary, inducible MEFs
strain
129/SvJ x C57/B6 hybrid
chip antibody
H3K4me2
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM640751: MEFControl_ChIP-Seq_H3K4me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29194883
Reads aligned (%)
68.0
Duplicates removed (%)
40.7
Number of peaks
16133 (qval < 1E-05)

mm9

Number of total reads
29194883
Reads aligned (%)
67.9
Duplicates removed (%)
40.8
Number of peaks
16131 (qval < 1E-05)

Base call quality data from DBCLS SRA