SRX033321
GSM636838: E0-12h Su[var]3-9 ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Su(var)3-9

Cell type

Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-12h
developmental stage
E0-12h
fly
iso1 (y; bw cn sp)
antibody name
Su[var]3-9
manufacturer
Abcam
catalog
ab4811

Sequenced DNA Library

library_name
GSM636838: E0-12h_Su[var]3-9_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
43568168
Reads aligned (%)
52.9
Duplicates removed (%)
45.5
Number of peaks
0 (qval < 1E-05)

dm6

Number of total reads
43568168
Reads aligned (%)
51.3
Duplicates removed (%)
46.9
Number of peaks
9931 (qval < 1E-05)

Base call quality data from DBCLS SRA