SRX033239
GSM638867: Pol2-S2P Day2+8h ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Day2+8hrs post-RA exposure
cell-line
HBG3
cell-stage
Day2+8h
chip-antibody
Pol2-S2P (Abcam H5 clone ab24758)

Sequenced DNA Library

library_name
GSM638867: Pol2-S2P_Day2+8h_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11725510
Reads aligned (%)
78.4
Duplicates removed (%)
7.7
Number of peaks
953 (qval < 1E-05)

mm9

Number of total reads
11725510
Reads aligned (%)
78.2
Duplicates removed (%)
8.0
Number of peaks
952 (qval < 1E-05)

Base call quality data from DBCLS SRA