SRX032467
GSM632033: ES H3K27me3 technical replicate a2 [ChIP-Seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells (ESCs)
strain
129Sv-C57Bl/6
genotype/variation
wild type
cell type
Embryonic Stem Cells (ESCs)
chip antibody
anti-H3K27me3

Sequenced DNA Library

library_name
GSM632033: ES_H3K27me3_technical _replicate_a2 [ChIP-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8365723
Reads aligned (%)
70.6
Duplicates removed (%)
7.2
Number of peaks
190 (qval < 1E-05)

mm9

Number of total reads
8365723
Reads aligned (%)
70.5
Duplicates removed (%)
7.4
Number of peaks
194 (qval < 1E-05)

Base call quality data from DBCLS SRA