SRX032120
GSM628262: E0-8h D KW3-D-D2 ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
D

Cell type

Cell type Class
Embryo
Cell type
0-8h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-8h_D
developmental stage
E0-8h_D
antibody name
KW3-D-D2
manufacturer
White Lab
catalog
N/A

Sequenced DNA Library

library_name
GSM628262: E0-8h_D_KW3-D-D2_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
27491207
Reads aligned (%)
36.1
Duplicates removed (%)
60.8
Number of peaks
1352 (qval < 1E-05)

dm6

Number of total reads
27491207
Reads aligned (%)
34.1
Duplicates removed (%)
62.8
Number of peaks
3601 (qval < 1E-05)

Base call quality data from DBCLS SRA