SRX031892
GSM628013: CTL PolII 8WG18 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myoblasts
strain
C3H
developmental stage
6-hours differentiated Myotubes

Sequenced DNA Library

library_name
GSM628013: CTL_PolII_8WG18_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28024911
Reads aligned (%)
96.6
Duplicates removed (%)
11.5
Number of peaks
10549 (qval < 1E-05)

mm9

Number of total reads
28024911
Reads aligned (%)
96.5
Duplicates removed (%)
11.6
Number of peaks
10628 (qval < 1E-05)

Base call quality data from DBCLS SRA