SRX031885
GSM628006: MT H3K4me3 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myoblasts
strain
C3H
developmental stage
48-hours differentiated Myotubes

Sequenced DNA Library

library_name
GSM628006: MT_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30967336
Reads aligned (%)
96.5
Duplicates removed (%)
17.3
Number of peaks
30913 (qval < 1E-05)

mm9

Number of total reads
30967336
Reads aligned (%)
96.3
Duplicates removed (%)
17.4
Number of peaks
31041 (qval < 1E-05)

Base call quality data from DBCLS SRA