SRX031217
GSM623991: Input DNA sequencing ChIPseq (control)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cells
strain
129J
cell type
mESCs
genotype/variation
wildtype

Sequenced DNA Library

library_name
GSM623991: Input_DNA_sequencing_ChIPseq (control)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10578813
Reads aligned (%)
97.3
Duplicates removed (%)
11.4
Number of peaks
224 (qval < 1E-05)

mm9

Number of total reads
10578813
Reads aligned (%)
97.2
Duplicates removed (%)
11.5
Number of peaks
233 (qval < 1E-05)

Base call quality data from DBCLS SRA