SRX031215
GSM623989: Prdm14 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cells
strain
129J
cell type
mESCs
genotype/variation
FH-Prdm14
chip antibody details
FLAG: mouse monoclonal anti-FLAG (clone M2), Sigma, Catalog A2220 (lot N/A)
chip antibody details
HA: mouse monoclonal anti-HA (clone HA-7), Sigma, Catalog A2095 (lot N/A)

Sequenced DNA Library

library_name
GSM623989: Prdm14_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13716044
Reads aligned (%)
91.2
Duplicates removed (%)
15.8
Number of peaks
39469 (qval < 1E-05)

mm9

Number of total reads
13716044
Reads aligned (%)
91.2
Duplicates removed (%)
16.0
Number of peaks
39461 (qval < 1E-05)

Base call quality data from DBCLS SRA