SRX031209
GSM616960: Mg H3K27Me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
strain
CD-1
tissue type
mammary gland
developmental stage
lactation day 8
gender
female
antibody
H3K27Me3
antibody vendor
millipore

Sequenced DNA Library

library_name
GSM616960: Mg_H3K27Me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19849363
Reads aligned (%)
96.2
Duplicates removed (%)
21.5
Number of peaks
116 (qval < 1E-05)

mm9

Number of total reads
19849363
Reads aligned (%)
96.1
Duplicates removed (%)
21.6
Number of peaks
105 (qval < 1E-05)

Base call quality data from DBCLS SRA