SRX031073
GSM616988: Mg H3K4Me2 rep3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland
strain
CD-1
tissue type
mammary gland
developmental stage
lactation day 8
gender
female
antibody
H3K4me2
antibody vendor
millipore

Sequenced DNA Library

library_name
GSM616988: Mg_H3K4Me2_rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9008935
Reads aligned (%)
96.2
Duplicates removed (%)
8.6
Number of peaks
27716 (qval < 1E-05)

mm9

Number of total reads
9008935
Reads aligned (%)
96.1
Duplicates removed (%)
8.6
Number of peaks
27748 (qval < 1E-05)

Base call quality data from DBCLS SRA