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BigWig
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BigWig
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: MEF
ATCC
MeSH
RIKEN BRC
SRX029282
GSM610763: G9a minus minus L2K H3K9Ac
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast
Attributes by original data submitter
Sample
source_name
MEF
strain
C57BL/6
cell type
Fibroblasts from day 13.5 embryos immortalized with SV40-LTA
genotype
G9a -/-, ERT2-Cre
passages
Passaged 12-15 times
chip antibody
H3K4me3
vendor
Millipore (17614)
lot
DAM1682153
treatment
treated with transfection reagent only
Sequenced DNA Library
library_name
GSM610763: G9a_minus_minus_L2K_H3K9Ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
17447543
Reads aligned (%)
59.5
Duplicates removed (%)
13.7
Number of peaks
13212 (qval < 1E-05)
mm9
Number of total reads
17447543
Reads aligned (%)
59.4
Duplicates removed (%)
13.9
Number of peaks
13243 (qval < 1E-05)
Base call quality data from
DBCLS SRA