SRX029276
GSM610757: G9a minus minus 4h pIC H3K9Ac

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF
strain
C57BL/6
cell type
Fibroblasts from day 13.5 embryos immortalized with SV40-LTA
genotype
G9a -/-, ERT2-Cre
passages
Passaged 12-15 times
chip antibody
H3K4me3
vendor
Millipore (17614)
lot
DAM1682153
treatment
transfected with polyIC

Sequenced DNA Library

library_name
GSM610757: G9a_minus_minus_4h_pIC_H3K9Ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34446797
Reads aligned (%)
78.1
Duplicates removed (%)
12.9
Number of peaks
11528 (qval < 1E-05)

mm9

Number of total reads
34446797
Reads aligned (%)
78.0
Duplicates removed (%)
12.9
Number of peaks
11478 (qval < 1E-05)

Base call quality data from DBCLS SRA