SRX029269
GSM610750: G9a f f L2K H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF
strain
C57BL/6
cell type
Fibroblasts from day 13.5 embryos immortalized with SV40-LTA
genotype
G9a f/f, ERT2-Cre
passages
Passaged 12-15 times
chip antibody
H3K9Ac
vendor
Abcam (ab4441)
lot
832666
treatment
treated with transfection reagent only

Sequenced DNA Library

library_name
GSM610750: G9a_f_f_L2K_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38574568
Reads aligned (%)
82.0
Duplicates removed (%)
30.4
Number of peaks
25018 (qval < 1E-05)

mm9

Number of total reads
38574568
Reads aligned (%)
81.9
Duplicates removed (%)
30.5
Number of peaks
25081 (qval < 1E-05)

Base call quality data from DBCLS SRA