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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9ac
wikigenes
PDBj
CellType: MEF
ATCC
MeSH
RIKEN BRC
SRX029263
GSM610744: G9a f f 4h pIC H3K4me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9ac
Cell type
Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast
Attributes by original data submitter
Sample
source_name
MEF
strain
C57BL/6
cell type
Fibroblasts from day 13.5 embryos immortalized with SV40-LTA
genotype
G9a f/f, ERT2-Cre
passages
Passaged 12-15 times
chip antibody
H3K9Ac
vendor
Abcam (ab4441)
lot
832666
treatment
transfected with polyIC
Sequenced DNA Library
library_name
GSM610744: G9a_f_f_4h_pIC_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
32846763
Reads aligned (%)
85.5
Duplicates removed (%)
27.6
Number of peaks
25608 (qval < 1E-05)
mm9
Number of total reads
32846763
Reads aligned (%)
85.4
Duplicates removed (%)
27.7
Number of peaks
25609 (qval < 1E-05)
Base call quality data from
DBCLS SRA