Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Neural

Cell type

Nucleus Accumbens

MeSH Description

Collection of pleomorphic cells in the caudal part of the anterior horn of the LATERAL VENTRICLE, in the region of the OLFACTORY TUBERCLE, lying between the head of the CAUDATE NUCLEUS and the ANTERIOR PERFORATED SUBSTANCE. It is part of the so-called VENTRAL STRIATUM, a composite structure considered part of the BASAL GANGLIA.

Sample

source_name

Mouse nucleus accumbens 24 hr

strain

C57BL/6J

age

8-week old

gender

male

treatment

7 treatments of saline

tissue

Bilateral, anterior/posterior 1mm-thick, 14-gauge punches, pooled together from 5 animals

antibody

H3K9me3

antibody vendor

Upstate Millipore

fraction

ChIP DNA

Sequenced DNA Library

library_name

GSM611268: Nucleus accumbens Saline 24 hr 2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

32229749

Reads aligned (%)

93.7

Duplicates removed (%)

51.4

Number of peaks

593 (qval < 1E-05)

mm9

Number of total reads

32229749

Reads aligned (%)

93.2

Duplicates removed (%)

51.4

Number of peaks

651 (qval < 1E-05)