SRX028647
GSM608164: H3K4me3 K562 ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2008-06-12
chip antibody
CST monoclonal rabbit anti-H3K4me3

Sequenced DNA Library

library_name
GSM608164: H3K4me3_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29065205
Reads aligned (%)
63.8
Duplicates removed (%)
17.8
Number of peaks
23360 (qval < 1E-05)

hg19

Number of total reads
29065205
Reads aligned (%)
63.6
Duplicates removed (%)
18.1
Number of peaks
23263 (qval < 1E-05)

Base call quality data from DBCLS SRA