SRX028630
GSM580757: H3Ac ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
strain
C57BL/6
cell type
CD4+ T cells stimulated by IL-6 and IL23
chip antibody
pan-H3Ac (Millipore, 06-599)

Sequenced DNA Library

library_name
GSM580757: H3Ac_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15289133
Reads aligned (%)
41.3
Duplicates removed (%)
5.5
Number of peaks
8502 (qval < 1E-05)

mm9

Number of total reads
15289133
Reads aligned (%)
41.2
Duplicates removed (%)
5.5
Number of peaks
8498 (qval < 1E-05)

Base call quality data from DBCLS SRA