SRX028555
GSM607495: CDX2 ChIP-seq in mouse jejunum villus cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cdx2

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal villus
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse villus
strain
C57BL/6-129 mixed
cell type
intestinal villus cells
chip antibody
CDX2

Sequenced DNA Library

library_name
GSM607495: CDX2 ChIP-seq in mouse jejunum villus cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6809710
Reads aligned (%)
93.8
Duplicates removed (%)
13.0
Number of peaks
927 (qval < 1E-05)

mm9

Number of total reads
6809710
Reads aligned (%)
93.6
Duplicates removed (%)
13.3
Number of peaks
926 (qval < 1E-05)

Base call quality data from DBCLS SRA