SRX028529
GSM585229: EedWT-Ring1B

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rnf2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6
cell type
embryonic stem cells
genotype/variation
wild type
chip antibody
Ring1B

Sequenced DNA Library

library_name
GSM585229: EedWT-Ring1B
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23088911
Reads aligned (%)
93.7
Duplicates removed (%)
6.7
Number of peaks
7531 (qval < 1E-05)

mm9

Number of total reads
23088911
Reads aligned (%)
93.5
Duplicates removed (%)
6.8
Number of peaks
7528 (qval < 1E-05)

Base call quality data from DBCLS SRA