SRX027694
Reference Epigenome: ChIP-Seq Analysis of H3K4me2 in hESC Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thompson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
None
DIFFERENTIATION_METHOD
None
PASSAGE
Between 20 and 40
MEDIUM
mTeSER
SEX
male
BATCH
H1U
sample_term_id
EFO_0003042

Sequenced DNA Library

library_name
YL96
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19724714
Reads aligned (%)
79.2
Duplicates removed (%)
3.8
Number of peaks
43511 (qval < 1E-05)

hg19

Number of total reads
19724714
Reads aligned (%)
78.9
Duplicates removed (%)
4.1
Number of peaks
43391 (qval < 1E-05)

Base call quality data from DBCLS SRA