SRX027495
GSM602845: NEC H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuroectodermal sphere cells (NEC) derived from H9 ESC
cell line
NEC
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM602845: NEC_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33759917
Reads aligned (%)
82.8
Duplicates removed (%)
23.7
Number of peaks
36845 (qval < 1E-05)

hg19

Number of total reads
33759917
Reads aligned (%)
82.7
Duplicates removed (%)
23.8
Number of peaks
36747 (qval < 1E-05)

Base call quality data from DBCLS SRA