SRX027488
GSM602297: ESC BRG1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Human embryonic stem cells
cell line
H9 ESC
chip antibody
BRG1

Sequenced DNA Library

library_name
GSM602297: ESC_BRG1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21117354
Reads aligned (%)
86.6
Duplicates removed (%)
4.2
Number of peaks
22083 (qval < 1E-05)

hg19

Number of total reads
21117354
Reads aligned (%)
86.5
Duplicates removed (%)
4.4
Number of peaks
22146 (qval < 1E-05)

Base call quality data from DBCLS SRA