SRX027484
GSM602293: ESC H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Human embryonic stem cells
cell line
H9 ESC
chip antibody
H3K27me3

Sequenced DNA Library

library_name
GSM602293: ESC_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15925532
Reads aligned (%)
90.8
Duplicates removed (%)
9.6
Number of peaks
4124 (qval < 1E-05)

hg19

Number of total reads
15925532
Reads aligned (%)
90.6
Duplicates removed (%)
9.8
Number of peaks
4141 (qval < 1E-05)

Base call quality data from DBCLS SRA