Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
strain
13R/9R cross
genotype/variation
wild type
chip antibody
input DNA

Sequenced DNA Library

library_name
GSM602207: Control for O
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
42643460
Reads aligned (%)
96.4
Duplicates removed (%)
7.9
Number of peaks
823 (qval < 1E-05)

mm9

Number of total reads
42643460
Reads aligned (%)
96.2
Duplicates removed (%)
8.0
Number of peaks
860 (qval < 1E-05)

Base call quality data from DBCLS SRA