Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Dmc1

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
adult testis
strain
13R/9R cross
genotype/variation
Hop2 -/-
chip antibody
DMC1 (C-20)
antibody catalog number
sc 8973
antibody lot
G0909
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM602190: DMC1, biological replicate A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
131136811
Reads aligned (%)
80.3
Duplicates removed (%)
15.8
Number of peaks
7120 (qval < 1E-05)

mm9

Number of total reads
131136811
Reads aligned (%)
80.2
Duplicates removed (%)
15.8
Number of peaks
7192 (qval < 1E-05)

Base call quality data from DBCLS SRA