ChIP-Atlas: SRX027390

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Pupae
Cell type: White prepupae
NA: NA

Attributes by original data submitter

Sample

source_name: white prepupae
developmental stage: white prepupae
fraction: input

Sequenced DNA Library

library_name: GSM602328: Dmel_WPP_CTCF_Input_2
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads: 6616104
Reads aligned (%): 89.2
Duplicates removed (%): 7.3
Number of peaks: 9525 (qval < 1E-05)

dm3

Number of total reads: 6616104
Reads aligned (%): 89.2
Duplicates removed (%): 6.9
Number of peaks: 9311 (qval < 1E-05)

Base call quality data from DBCLS SRA