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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: White prepupae
ATCC
MeSH
RIKEN BRC
SRX027389
GSM602327: Dmel WPP CTCF Input 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Pupae
Cell type
White prepupae
NA
NA
Attributes by original data submitter
Sample
source_name
white prepupae
developmental stage
white prepupae
fraction
input
Sequenced DNA Library
library_name
GSM602327: Dmel_WPP_CTCF_Input_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
7157458
Reads aligned (%)
96.2
Duplicates removed (%)
5.2
Number of peaks
8938 (qval < 1E-05)
dm3
Number of total reads
7157458
Reads aligned (%)
96.5
Duplicates removed (%)
4.5
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA