SRX027336
GSM594582: ChIP-Seq for H3K4me1 in ES (129JAE-C57/B6) cells containing the dox inducible 4f2a transgene (carey et al.,2010)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
H3K4me1
antibody catalog number
Abcam AB8895
cell type
embryonic stem cells

Sequenced DNA Library

library_name
GSM594582: ChIP-Seq for H3K4me1 in ES (129JAE-C57/B6) cells containing the dox inducible 4f2a transgene (carey et al.,2010)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13166703
Reads aligned (%)
94.6
Duplicates removed (%)
6.6
Number of peaks
1779 (qval < 1E-05)

mm9

Number of total reads
13166703
Reads aligned (%)
94.5
Duplicates removed (%)
6.8
Number of peaks
1796 (qval < 1E-05)

Base call quality data from DBCLS SRA