SRX027331
GSM594578: ChIP-Seq for H3K27ac in ES (129JAE-C57/B6) cells 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
H3K27ac
antibody catalog number
Abcam AB4729
cell type
embryonic stem cells

Sequenced DNA Library

library_name
GSM594578: ChIP-Seq for H3K27ac in ES (129JAE-C57/B6) cells 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14657880
Reads aligned (%)
87.1
Duplicates removed (%)
4.9
Number of peaks
27473 (qval < 1E-05)

mm9

Number of total reads
14657880
Reads aligned (%)
87.0
Duplicates removed (%)
5.0
Number of peaks
27438 (qval < 1E-05)

Base call quality data from DBCLS SRA