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Install and launch IGV before selecting data to visualize
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: lem-2
wikigenes
PDBj
CellType: Mixed embryo
ATCC
MeSH
RIKEN BRC
SRX027098
GSM596155: seq-SDQ3891 LEM2 N2 MXemb 1 A EE8 KI021
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
lem-2
Cell type
Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA
Attributes by original data submitter
Sample
source_name
Caenorhabditis elegans_N2_MXemb
strain
N2
Stage
MXemb
chip antibody
LEM2
antibody manufacturer
SDI
Sequenced DNA Library
library_name
GSM596155: seq-SDQ3891_LEM2_N2_MXemb_1_A_EE8_KI021
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
ce10
Number of total reads
10435718
Reads aligned (%)
64.4
Duplicates removed (%)
13.6
Number of peaks
4329 (qval < 1E-05)
ce11
Number of total reads
10435718
Reads aligned (%)
64.4
Duplicates removed (%)
13.6
Number of peaks
4243 (qval < 1E-05)
Base call quality data from
DBCLS SRA