SRX027078
Chromatin accessibility assay of Fetal lung tissue

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Lung
Cell type
Fetal lung
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
fetal lung
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-22934B
DONOR_AGE
day 108
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002048

Sequenced DNA Library

library_name
DS13507
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52403863
Reads aligned (%)
96.1
Duplicates removed (%)
20.2
Number of peaks
97033 (qval < 1E-05)

hg19

Number of total reads
52403863
Reads aligned (%)
95.7
Duplicates removed (%)
21.3
Number of peaks
96893 (qval < 1E-05)

Base call quality data from DBCLS SRA