SRX026925
Chromatin accessibility assay of Fetal Lung Primary Tissue

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Lung
Cell type
Fetal lung
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
fetal lung
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-22727
DONOR_AGE
101 days
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002048

Sequenced DNA Library

library_name
DS12817
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44660982
Reads aligned (%)
75.7
Duplicates removed (%)
24.4
Number of peaks
124378 (qval < 1E-05)

hg19

Number of total reads
44660982
Reads aligned (%)
75.4
Duplicates removed (%)
25.1
Number of peaks
124189 (qval < 1E-05)

Base call quality data from DBCLS SRA