SRX026651
GSM585602: AML pz229 MethylCap no [42D36AAXX 4]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MethylCap

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML pz229 (leukemic)
cell type
hematopoietic cell
disease state
leukemic
treatment
no
antibody
MethylCap
antibody vendor
MethylCap

Sequenced DNA Library

library_name
GSM585602: AML pz229_ MethylCap_no [42D36AAXX_4]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11861231
Reads aligned (%)
95.6
Duplicates removed (%)
16.4
Number of peaks
2793 (qval < 1E-05)

hg19

Number of total reads
11861231
Reads aligned (%)
93.3
Duplicates removed (%)
18.7
Number of peaks
2601 (qval < 1E-05)

Base call quality data from DBCLS SRA