SRX026537
GSM589244: Control input DNA of MCF-7

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cells
fraction
input DNA

Sequenced DNA Library

library_name
GSM589244: Control input DNA of MCF-7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23387170
Reads aligned (%)
38.1
Duplicates removed (%)
1.7
Number of peaks
71 (qval < 1E-05)

hg19

Number of total reads
23387170
Reads aligned (%)
37.6
Duplicates removed (%)
2.4
Number of peaks
262 (qval < 1E-05)

Base call quality data from DBCLS SRA