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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX026471
GSM578478: pSmad2 input DNA Seq of ES cells treated for 18 hours in 1/5000 DMSO
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
E14 TG2A mouse embryonic stem cells
cell type
E14 TG2A mouse embryonic stem cells
fraction
Input DNA
treatment
1/5000 DMSO
Sequenced DNA Library
library_name
GSM578478: pSmad2 input DNA Seq of ES cells treated for 18 hours in 1/5000 DMSO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
14725320
Reads aligned (%)
94.7
Duplicates removed (%)
13.6
Number of peaks
670 (qval < 1E-05)
mm9
Number of total reads
14725320
Reads aligned (%)
94.4
Duplicates removed (%)
13.8
Number of peaks
733 (qval < 1E-05)
Base call quality data from
DBCLS SRA