SRX026470
GSM578477: pSmad2 input DNA Seq of ES cells treated for 18 hours in 25ng/ml Activin

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 TG2A mouse embryonic stem cells
cell type
E14 TG2A mouse embryonic stem cells
fraction
Input DNA
treatment
25ng/ml Activin

Sequenced DNA Library

library_name
GSM578477: pSmad2 input DNA Seq of ES cells treated for 18 hours in 25ng/ml Activin
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13316836
Reads aligned (%)
93.8
Duplicates removed (%)
13.0
Number of peaks
593 (qval < 1E-05)

mm9

Number of total reads
13316836
Reads aligned (%)
93.5
Duplicates removed (%)
13.2
Number of peaks
657 (qval < 1E-05)

Base call quality data from DBCLS SRA