Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
Adult(P56)_Cerebellum
strain
CD1
age
postnatal day 56
developmental stage
adult
tissue
cerebellum
chip-antibody
anti-H3K4me3
antibody vendor
Abcam Inc.

Sequenced DNA Library

library_name
GSM587803: Adult_Cerebellum_H3K4me3_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
11728053
Reads aligned (%)
95.2
Duplicates removed (%)
25.7
Number of peaks
16988 (qval < 1E-05)

mm9

Number of total reads
11728053
Reads aligned (%)
95.1
Duplicates removed (%)
25.8
Number of peaks
16982 (qval < 1E-05)

Base call quality data from DBCLS SRA