Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
PostNatal-Day15_Cerebellum
strain
CD1
age
postnatal day 15
tissue
cerebellum
chip-antibody
anti-H3K4me3
antibody vendor
Abcam Inc.

Sequenced DNA Library

library_name
GSM587802: P15_Cerebellum_H3K4me3_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
12669541
Reads aligned (%)
96.5
Duplicates removed (%)
24.2
Number of peaks
18335 (qval < 1E-05)

mm9

Number of total reads
12669541
Reads aligned (%)
96.5
Duplicates removed (%)
24.2
Number of peaks
18346 (qval < 1E-05)

Base call quality data from DBCLS SRA