SRX026274
GSM590113: TNGA-2i H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem cells
strain
C57BL/6 x 129
cell type
ES-cells
chip antibody
H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM590113: TNGA-2i_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31300146
Reads aligned (%)
97.4
Duplicates removed (%)
20.3
Number of peaks
429 (qval < 1E-05)

mm9

Number of total reads
31300146
Reads aligned (%)
97.2
Duplicates removed (%)
20.3
Number of peaks
510 (qval < 1E-05)

Base call quality data from DBCLS SRA