SRX026270
GSM590109: TNGA-2i H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem cells
strain
C57BL/6 x 129
cell type
ES-cells
chip antibody
H3K4me3
chip antibody vendor
Diagenode

Sequenced DNA Library

library_name
GSM590109: TNGA-2i_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24552200
Reads aligned (%)
79.1
Duplicates removed (%)
42.5
Number of peaks
23981 (qval < 1E-05)

mm9

Number of total reads
24552200
Reads aligned (%)
78.9
Duplicates removed (%)
42.6
Number of peaks
24547 (qval < 1E-05)

Base call quality data from DBCLS SRA